03 / SELECTED WORK
Tools and workflows built to be inspected, tested and improved.
Scientific software
A Python and Streamlit research tool for finding one SpCas9 guide that can target multiple homologous plant genes. It supports exact shared-guide discovery, mismatch-aware consensus design, per-gene target evidence, provenance tracking and explicit PASS / REVIEW / FAIL validation.
Scientific software
A conservative OpenCRISPR-1 guide-design workbench for 20-nt + NGG candidate discovery on both strands, guide-format review, sequence-quality ranking, local specificity screening and reproducible sequence provenance.
Scientific software
An interactive Streamlit workbench for discovering, ranking, reviewing and exporting SpCas9 guide-RNA candidates, with gene lookup, both-strand scanning, CRISPRi support and local-reference specificity screening.
Research workflow
A machine-learning soft sensor for estimating penicillin concentration from simulated fermentation batches, with normal-only versus fault-inclusive modelling, repeated complete-batch validation, uncertainty analysis and out-of-distribution detection.
STRUCTURE → DOCKING → DYNAMICSResearch study
Structural and computational biology work involving protein visualization and preparation, screening of FDA-approved compounds, molecular docking and molecular-dynamics analysis of promising protein-ligand complexes.
PHAGES / ENDOLYSINS / HOST PREDICTIONResearch in progress
Developing a computational pipeline from phage/viral sequence discovery and annotation to endolysin identification and host prediction using protein-sequence representations and machine learning.
Open tools. Reproducible workflows. Biological questions.